Computational Biology A Practical Introduction to BioData Processing and Analysis with Linux, MySQL, and R /
This greatly expanded 2nd edition provides a practical introduction to - data processing with Linux tools and the programming languages AWK and Perl - data management with the relational database system MySQL, and - data analysis and visualization with the statistical computing environment R for stu...
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| Language: | English |
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Berlin, Heidelberg :
Springer Berlin Heidelberg : Imprint: Springer,
2013.
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| Edition: | 2nd ed. 2013. |
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| Online Access: | https://doi.org/10.1007/978-3-642-34749-8 |
Table of Contents:
- Part I Whetting Your Appetite
- 1 Introduction
- 2 Content of this Book
- Part II Computer & Operating Systems
- 3 Unix/Linux
- Part III Working with Linux
- 4 The First Touch
- 5 Working with Files
- 6 Remote Connections
- 7 Playing
- 8 Using the Shell
- 9 Installing BLAST+ and ClustalW
- 10 Shell Programming
- 11 Regular Expressions
- 12 Sed
- Part IV Programming
- 13 AWK
- 14 Perl
- 15 Other Programming Languages
- Part V Advanced Data Analysis
- 16 Relational Databases with MySQL
- 17 The Statistics Suite R
- Part VI Worked Examples
- 18 Genomic Analysis of the Pathogenicity Factors from E. coli Strain O157:H7 and EHEC Strain O104:H4
- 19 Limits of BLAST & Homology Modeling
- 20 Virtual Sequencing of pUC18c
- 21 Querying for Potential Redox-Regulated Enzymes
- Part VII Additional Material
- References
- A Supplementary Information
- Solutions
- Index.